If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ), 'gf_id' => 'HOM05D000772', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000772' ), 'data_identifier' => 'HOM05D000772', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000772', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13650' => 'bna', 'A01p33730' => 'bna', 'A02p22400' => 'bna', 'A03p42030' => 'bna', 'A03p53430' => 'bna', 'A06p12770' => 'bna', 'A06p27490' => 'bna', 'A06p41390' => 'bna', 'A07p44060' => 'bna', 'A08p31270' => 'bna', 'A09p20840' => 'bna', 'A09p26620' => 'bna', 'Aa31LG10G3220' => 'aar', 'Aa31LG2G5230' => 'aar', 'Aa31LG4G2130' => 'aar', 'Aa31LG6G4390' => 'aar', 'Aa31LG7G1290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2426' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1111' => 'aag', 'Actinidia02328' => 'ach', 'Actinidia07543' => 'ach', 'Actinidia11876' => 'ach', 'Actinidia21648' => 'ach', 'Actinidia21878' => 'ach', 'Actinidia21880' => 'ach', 'Actinidia26874' => 'ach', 'Actinidia28096' => 'ach', 'Actinidia31128' => 'ach', 'Actinidia31129' => 'ach', 'Actinidia38802' => 'ach', 'Actinidia38804' => 'ach', 'Actinidia39265' => 'ach', 'Ah.09g232200' => 'amhyb', 'Ah.14g087740' => 'amhyb', 'Ah.15g094350' => 'amhyb', 'AL1G29030' => 'aly', 'AL1G59430' => 'aly', 'AL2G39290' => 'aly', 'AL3G35060' => 'aly', 'AL5G16360' => 'aly', 'AL6G47650' => 'aly', 'AL7G31330' => 'aly', 'Aqoxy1G04157' => 'aox', 'Aqoxy5G03506' => 'aox', 'Aqoxy7G02812' => 'aox', 'arahy.Tifrunner.gnm1.ann1.236ESJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31KTN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40XDBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4626QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97TBCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9943LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUDK8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5KZZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKD7ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSB289' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JAFV55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0LQMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1RTP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5T91D' => 'arhy', 'AT1G16860' => 'ath', 'AT1G51540' => 'ath', 'AT1G78880' => 'ath', 'AT3G27220' => 'ath', 'AT4G22290' => 'ath', 'ATR0626G160' => 'atr', 'ATR0681G244' => 'atr', 'ATR0824G237' => 'atr', 'ATR0954G001' => 'atr', 'ATR1128G042' => 'atr', 'Atru.chr1.2492' => 'acertr', 'Atru.chr1.2723' => 'acertr', 'Atru.chr1.2728' => 'acertr', 'Atru.chr1.2730' => 'acertr', 'Atru.chr5.740' => 'acertr', 'AUR62001350' => 'cqu', 'AUR62025654' => 'cqu', 'AUR62027412' => 'cqu', 'AUR62031327' => 'cqu', 'AUR62037339' => 'cqu', 'AUR62042680' => 'cqu', 'BcaB01g01771' => 'bca', 'BcaB02g06670' => 'bca', 'BcaB03g13029' => 'bca', 'BcaB03g16048' => 'bca', 'BcaB04g19142' => 'bca', 'BcaB04g20610' => 'bca', 'BcaB05g25159' => 'bca', 'BcaB06g26182' => 'bca', 'BcaC01g03527' => 'bca', 'BcaC02g11786' => 'bca', 'BcaC03g15845' => 'bca', 'BcaC04g21259' => 'bca', 'BcaC05g25542' => 'bca', 'BcaC05g28227' => 'bca', 'BcaC06g30998' => 'bca', 'BcaC06g33841' => 'bca', 'BcaC06g33842' => 'bca', 'BcaC07g38818' => 'bca', 'BcaC08g47446' => 'bca', 'BcaC09g49051' => 'bca', 'BcaC09g51144' => 'bca', 'BcaNung01698' => 'bca', 'BcaNung02506' => 'bca', 'BcaNung03747' => 'bca', 'BcaNung05302' => 'bca', 'BolC1t01603H' => 'bol', 'BolC1t04258H' => 'bol', 'BolC2t09608H' => 'bol', 'BolC3t17430H' => 'bol', 'BolC4t22776H' => 'bol', 'BolC5t30223H' => 'bol', 'BolC6t40295H' => 'bol', 'BolC7t44141H' => 'bol', 'BolC7t45678H' => 'bol', 'BolC8t49382H' => 'bol', 'BolC9t56208H' => 'bol', 'BraA01t01308Z' => 'bra', 'BraA01t03486Z' => 'bra', 'BraA02t07244Z' => 'bra', 'BraA03t13357Z' => 'bra', 'BraA03t14409Z' => 'bra', 'BraA06t24437Z' => 'bra', 'BraA06t27064Z' => 'bra', 'BraA07t31913Z' => 'bra', 'BraA08t35050Z' => 'bra', 'BraA09t37687Z' => 'bra', 'BraA09t38235Z' => 'bra', 'C01p16530' => 'bna', 'C01p43110' => 'bna', 'C02p35970' => 'bna', 'C03p51450' => 'bna', 'C04p11390' => 'bna', 'C05p15080' => 'bna', 'C06p52780' => 'bna', 'C07p36280' => 'bna', 'C07p51760' => 'bna', 'C08p17570' => 'bna', 'C09p33740' => 'bna', 'CAN.G1045.48' => 'can', 'CAN.G1186.16' => 'can', 'CAN.G1222.1' => 'can', 'CAN.G1263.10' => 'can', 'CAN.G473.76' => 'can', 'CAN.G67.1' => 'can', 'CAN.G790.15' => 'can', 'CAN.G790.16' => 'can', 'CAN.G886.13' => 'can', 'CANSAT01G0082' => 'cansat', 'CANSAT01G0879' => 'cansat', 'CANSAT01G1298' => 'cansat', 'CANSAT56G3483' => 'cansat', 'CANSAT56G4303' => 'cansat', 'CANSAT64G1620' => 'cansat', 'CARHR017330' => 'chi', 'CARHR072460' => 'chi', 'CARHR096950' => 'chi', 'CARHR148480' => 'chi', 'CARHR229190' => 'chi', 'CARHR253490' => 'chi', 'Carub.0001s1660' => 'cru', 'Carub.0001s4039' => 'cru', 'Carub.0002s2570' => 'cru', 'Carub.0003s2102' => 'cru', 'Carub.0003s2107' => 'cru', 'Carub.0005s0546' => 'cru', 'Carub.0007s1902' => 'cru', 'Carub.0043s0007' => 'cru', 'Carub.0043s0009' => 'cru', 'Ca_00710_v3' => 'car', 'Ca_00879_v3' => 'car', 'Ca_03821_v3' => 'car', 'Ca_20507_v3' => 'car', 'Ca_20508_v3' => 'car', 'Ca_20966_v3' => 'car', 'Cc00_g31140' => 'ccan', 'Cc02_g39800' => 'ccan', 'Cc04_g00250' => 'ccan', 'Cc04_g00260' => 'ccan', 'Cc08_g07680' => 'ccan', 'Cc09_g01020' => 'ccan', 'CDE02G3518' => 'cde', 'CDE02G4086' => 'cde', 'CDE04G2058' => 'cde', 'CDE04G2072' => 'cde', 'CDE04G2958' => 'cde', 'CDE04G3297' => 'cde', 'CDE05G0538' => 'cde', 'CDE05G1258' => 'cde', 'CDE06G1517' => 'cde', 'CDE07G1028' => 'cde', 'Cfa000127' => 'cfa', 'Cfa001851' => 'cfa', 'Cfa002145' => 'cfa', 'Cfa002146' => 'cfa', 'Cfa003758' => 'cfa', 'Cfa007259' => 'cfa', 'Ciclev10007064m.g' => 'ccl', 'Ciclev10015294m.g' => 'ccl', 'Ciclev10015369m.g' => 'ccl', 'Ciclev10017441m.g' => 'ccl', 'Ciclev10021478m.g' => 'ccl', 'Ciclev10025461m.g' => 'ccl', 'Ciclev10025501m.g' => 'ccl', 'Ciclev10025668m.g' => 'ccl', 'CiPaw.01G079700' => 'cil', 'CiPaw.01G089500' => 'cil', 'CiPaw.01G090000' => 'cil', 'CiPaw.02G050100' => 'cil', 'CiPaw.03G051900' => 'cil', 'CiPaw.09G100600' => 'cil', 'CiPaw.10G076400' => 'cil', 'ClCG01G021580' => 'cla', 'ClCG03G009680' => 'cla', 'ClCG05G000540' => 'cla', 'ClCG07G014590' => 'cla', 'ClCG07G014600' => 'cla', 'COL.COLO4_06262' => 'col', 'COL.COLO4_08769' => 'col', 'COL.COLO4_12278' => 'col', 'COL.COLO4_19226' => 'col', 'COL.COLO4_28655' => 'col', 'COL.COLO4_31173' => 'col', 'COL.COLO4_31174' => 'col', 'COL.COLO4_31175' => 'col', 'COL.COLO4_31176' => 'col', 'COL.COLO4_31859' => 'col', 'Cpa.g.c37601' => 'cpa', 'Cpa.g.sc130.12' => 'cpa', 'Cpa.g.sc155.22' => 'cpa', 'Cpa.g.sc155.23' => 'cpa', 'Cpa.g.sc4741.1' => 'cpa', 'Cpa.g.sc4741.2' => 'cpa', 'Cpa.g.sc75.122' => 'cpa', 'CsaV3_1G045130' => 'csa', 'CsaV3_3G007760' => 'csa', 'CsaV3_3G030640' => 'csa', 'CsaV3_3G030650' => 'csa', 'CsaV3_3G030660' => 'csa', 'CsaV3_6G048620' => 'csa', 'CSS0012381' => 'camsi', 'CSS0021961' => 'camsi', 'CSS0022816' => 'camsi', 'CSS0022845' => 'camsi', 'CSS0030970' => 'camsi', 'CSS0031355' => 'camsi', 'CSS0036406' => 'camsi', 'CSS0037532' => 'camsi', 'DCAR_002155' => 'dca', 'DCAR_002212' => 'dca', 'DCAR_004867' => 'dca', 'DCAR_014668' => 'dca', 'DCAR_015084' => 'dca', 'DCAR_018029' => 'dca', 'DCAR_022614' => 'dca', 'DCAR_022615' => 'dca', 'Dinv07385' => 'din', 'Dinv13955' => 'din', 'Dinv25446' => 'din', 'Dinv25682' => 'din', 'Dinv32628' => 'din', 'Dinv34244' => 'din', 'Dinv37785' => 'din', 'Dinv41181' => 'din', 'Duzib147G1446' => 'dzi', 'Duzib160G0928' => 'dzi', 'Duzib187G0787' => 'dzi', 'Duzib192G0041' => 'dzi', 'Duzib235G0131' => 'dzi', 'Duzib235G1187' => 'dzi', 'Duzib235G1207' => 'dzi', 'ECA232G1711' => 'eca', 'ECA234G1936' => 'eca', 'ECA236G5043' => 'eca', 'ECA240G0544' => 'eca', 'ECA240G1045' => 'eca', 'ECA240G1544' => 'eca', 'EL10Ac1g00212' => 'bvu', 'EL10Ac7g18170' => 'bvu', 'EL10Ac8g19306' => 'bvu', 'EL10Ac8g20164' => 'bvu', 'Eucgr.D01383' => 'egr', 'Eucgr.F04025' => 'egr', 'Eucgr.F04026' => 'egr', 'Eucgr.I01667' => 'egr', 'Eucgr.J03168' => 'egr', 'FAN01G2194' => 'fan', 'FAN02G1621' => 'fan', 'FAN02G2325' => 'fan', 'FAN02G2611' => 'fan', 'FAN03G2831' => 'fan', 'FAN05G1910' => 'fan', 'FAN05G2236' => 'fan', 'FAN05G5057' => 'fan', 'FAN06G3067' => 'fan', 'FAN06G3880' => 'fan', 'FAN09G3376' => 'fan', 'FAN09G4871' => 'fan', 'FAN10G0442' => 'fan', 'FAN10G3037' => 'fan', 'FAN14G1431' => 'fan', 'FAN14G2796' => 'fan', 'FAN14G3357' => 'fan', 'FAN14G4392' => 'fan', 'FAN21G2962' => 'fan', 'FAN25G3775' => 'fan', 'FvH4_3g01150' => 'fve', 'FvH4_6g37090' => 'fve', 'FvH4_6g37091' => 'fve', 'FvH4_6g37100' => 'fve', 'FvH4_6g52971' => 'fve', 'FvH4_7g17310' => 'fve', 'Glyma.07G002600' => 'gma', 'Glyma.07G020800' => 'gma', 'Glyma.08G221000' => 'gma', 'Glyma.08G221200' => 'gma', 'Glyma.08G224000' => 'gma', 'Glyma.09G009000' => 'gma', 'Glyma.13G372500' => 'gma', 'Glyma.15G001200' => 'gma', 'Glyma.15G113400' => 'gma', 'Glyma.16G062000' => 'gma', 'Glyma.19G085100' => 'gma', 'Gohir.1Z049455' => 'ghi', 'Gohir.A02G093900' => 'ghi', 'Gohir.A05G114350' => 'ghi', 'Gohir.A05G114400' => 'ghi', 'Gohir.A05G173600' => 'ghi', 'Gohir.A05G340900' => 'ghi', 'Gohir.A06G112502' => 'ghi', 'Gohir.A06G152400' => 'ghi', 'Gohir.A09G034000' => 'ghi', 'Gohir.A10G002600' => 'ghi', 'Gohir.A10G002700' => 'ghi', 'Gohir.A10G010000' => 'ghi', 'Gohir.A12G114700' => 'ghi', 'Gohir.D02G111800' => 'ghi', 'Gohir.D04G079150' => 'ghi', 'Gohir.D05G114700' => 'ghi', 'Gohir.D05G176600' => 'ghi', 'Gohir.D06G158700' => 'ghi', 'Gohir.D09G034950' => 'ghi', 'Gohir.D10G002600' => 'ghi', 'Gohir.D10G002700' => 'ghi', 'Gohir.D10G009700' => 'ghi', 'Gohir.D12G118000' => 'ghi', 'Gorai.005G126800' => 'gra', 'Gorai.006G039800' => 'gra', 'Gorai.008G127900' => 'gra', 'Gorai.009G118900' => 'gra', 'Gorai.009G182000' => 'gra', 'Gorai.010G185400' => 'gra', 'Gorai.011G003000' => 'gra', 'Gorai.011G003100' => 'gra', 'Gorai.011G010600' => 'gra', 'Gorai.012G089100' => 'gra', 'GSVIVG01001829001' => 'vvi', 'GSVIVG01016057001' => 'vvi', 'GSVIVG01027406001' => 'vvi', 'GSVIVG01029320001' => 'vvi', 'GSVIVG01029570001' => 'vvi', 'GSVIVG01031358001' => 'vvi', 'HanXRQChr03g0065481' => 'han', 'HanXRQChr03g0065491' => 'han', 'HanXRQChr05g0141061' => 'han', 'HanXRQChr05g0161241' => 'han', 'HanXRQChr09g0245401' => 'han', 'HanXRQChr09g0248821' => 'han', 'HanXRQChr09g0255981' => 'han', 'HanXRQChr09g0255991' => 'han', 'HanXRQChr09g0277421' => 'han', 'HanXRQChr13g0410551' => 'han', 'HanXRQChr14g0438631' => 'han', 'HanXRQChr14g0447511' => 'han', 'HanXRQChr15g0470841' => 'han', 'HanXRQChr15g0481431' => 'han', 'HanXRQChr15g0497471' => 'han', 'HanXRQChr16g0516821' => 'han', 'Haze_06897' => 'cav', 'Haze_14829' => 'cav', 'Haze_15707' => 'cav', 'Haze_16275' => 'cav', 'Haze_16276' => 'cav', 'Haze_16277' => 'cav', 'Hma1.2p1_0517F.1_g170720' => 'hma', 'Hma1.2p1_0620F.1_g190460' => 'hma', 'Hma1.2p1_1111F.1_g258370' => 'hma', 'Hma1.2p1_1326F.1_g275860' => 'hma', 'HPP92_000207' => 'vpl', 'HPP92_000221' => 'vpl', 'HPP92_002697' => 'vpl', 'HPP92_008087' => 'vpl', 'HPP92_008088' => 'vpl', 'HPP92_008107' => 'vpl', 'HPP92_008128' => 'vpl', 'HPP92_010789' => 'vpl', 'HPP92_014623' => 'vpl', 'HPP92_018821' => 'vpl', 'Hund05553' => 'sun', 'Hund12697' => 'sun', 'Hund12698' => 'sun', 'Hund16737' => 'sun', 'Hund18607' => 'sun', 'Hund21157' => 'sun', 'Lalb_Chr04g0264611' => 'lal', 'Lalb_Chr06g0174331' => 'lal', 'Lalb_Chr14g0376181' => 'lal', 'Lalb_Chr15g0087881' => 'lal', 'Lalb_Chr18g0056871' => 'lal', 'Lalb_Chr24g0403371' => 'lal', 'Lalb_Chr25g0278711' => 'lal', 'Lj1C1238G16' => 'lonja', 'Lj1g0013450' => 'lja', 'Lj2A263T45' => 'lonja', 'Lj3g0006306' => 'lja', 'Lj3g0018961' => 'lja', 'Lj3g0019822' => 'lja', 'Lj4A729T43' => 'lonja', 'Lj5A23G24' => 'lonja', 'Lj6g0027188' => 'lja', 'Lj9C602T12' => 'lonja', 'Lsat_1_v5_gn_4_185521' => 'lsa', 'Lsat_1_v5_gn_4_62920' => 'lsa', 'Lsat_1_v5_gn_4_89180' => 'lsa', 'Lsat_1_v5_gn_4_89200' => 'lsa', 'Lsat_1_v5_gn_7_14641' => 'lsa', 'Lsat_1_v5_gn_7_56021' => 'lsa', 'Lsat_1_v5_gn_8_69060' => 'lsa', 'Manes.05G018800' => 'mes', 'Manes.06G176800' => 'mes', 'Manes.06G176900' => 'mes', 'Manes.10G055000' => 'mes', 'Manes.14G007600' => 'mes', 'Manes.15G157700' => 'mes', 'Manes.16G001700' => 'mes', 'Mapoly0018s0010' => 'mpo', 'MapolyY_A0007' => 'mpo', 'MBI04_g25307_MAGBIO' => 'mbi', 'MBI08_g29306_MAGBIO' => 'mbi', 'MBI08_g41850_MAGBIO' => 'mbi', 'MBI08_g46024_MAGBIO' => 'mbi', 'MBI11_g22739_MAGBIO' => 'mbi', 'MBI11_g22740_MAGBIO' => 'mbi', 'MBI13_g34047_MAGBIO' => 'mbi', 'MBI14_g23357_MAGBIO' => 'mbi', 'MBI16_g05832_MAGBIO' => 'mbi', 'MBI16_g35927_MAGBIO' => 'mbi', 'MBI19_g29451_MAGBIO' => 'mbi', 'MD05G1355500' => 'mdo', 'MD05G1355900' => 'mdo', 'MD07G1155900' => 'mdo', 'MD09G1161600' => 'mdo', 'MD09G1163300' => 'mdo', 'MD09G1163400' => 'mdo', 'MD10G1329200' => 'mdo', 'MD11G1023600' => 'mdo', 'MD17G1015900' => 'mdo', 'MD17G1147500' => 'mdo', 'MD17G1147900' => 'mdo', 'MD17G1164200' => 'mdo', 'MD17G1164300' => 'mdo', 'Medtr0018s0170' => 'mtr', 'Medtr2g025190' => 'mtr', 'Medtr4g005510' => 'mtr', 'Medtr4g007930' => 'mtr', 'Medtr4g007970' => 'mtr', 'Medtr4g094505' => 'mtr', 'Medtr7g032050' => 'mtr', 'Medtr8g106490' => 'mtr', 'MELO3C005993.2' => 'cme', 'MELO3C007426.2' => 'cme', 'MELO3C010135.2' => 'cme', 'MELO3C022658.2' => 'cme', 'MELO3C022659.2' => 'cme', 'MELO3C022662.2' => 'cme', 'Migut.H00015' => 'egut', 'Migut.I01189' => 'egut', 'Migut.I01190' => 'egut', 'Migut.L01880' => 'egut', 'Migut.M01380' => 'egut', 'MSTRG.10439' => 'ama', 'MSTRG.13123' => 'ama', 'MSTRG.16015' => 'ama', 'MSTRG.22504' => 'ama', 'MSTRG.24079' => 'ama', 'MSTRG.26547' => 'ama', 'MSTRG.9556' => 'ama', 'Nitab4.5_0000007g0340' => 'nta', 'Nitab4.5_0000007g0360' => 'nta', 'Nitab4.5_0000143g0450' => 'nta', 'Nitab4.5_0000307g0180' => 'nta', 'Nitab4.5_0000491g0140' => 'nta', 'Nitab4.5_0000574g0290' => 'nta', 'Nitab4.5_0001031g0040' => 'nta', 'Nitab4.5_0001198g0190' => 'nta', 'Nitab4.5_0001691g0160' => 'nta', 'Nitab4.5_0001691g0200' => 'nta', 'Nitab4.5_0002887g0160' => 'nta', 'Nitab4.5_0004955g0010' => 'nta', 'Nitab4.5_0005864g0010' => 'nta', 'Nitab4.5_0006750g0020' => 'nta', 'Nitab4.5_0006975g0020' => 'nta', 'Nitab4.5_0007929g0050' => 'nta', 'Nitab4.5_0008006g0050' => 'nta', 'Nn1g07327' => 'nnu', 'Nn2g12735' => 'nnu', 'Nn2g12762' => 'nnu', 'Nn3g18810' => 'nnu', 'Nn4g26396' => 'nnu', 'Nn8g40777' => 'nnu', 'Nn8g41055' => 'nnu', 'Oeu001815.1' => 'oeu', 'Oeu002755.1' => 'oeu', 'Oeu003169.1' => 'oeu', 'Oeu006843.1' => 'oeu', 'Oeu011099.1' => 'oeu', 'Oeu011100.2' => 'oeu', 'Oeu023235.1' => 'oeu', 'Oeu028638.4' => 'oeu', 'Oeu031652.1' => 'oeu', 'Oeu031653.3' => 'oeu', 'Oeu032244.1' => 'oeu', 'Oeu034801.2' => 'oeu', 'Oeu043962.1' => 'oeu', 'Oeu049637.1' => 'oeu', 'Oeu049723.2' => 'oeu', 'Oeu055541.4' => 'oeu', 'Oeu057932.1' => 'oeu', 'Os04g0487100' => 'osa', 'Os04g0541900' => 'osa', 'Os04g0606500' => 'osa', 'Os08g0128000' => 'osa', 'Os08g0230100' => 'osa', 'Os08g0230200' => 'osa', 'Peaxi162Scf00006g02613' => 'pax', 'Peaxi162Scf00006g02614' => 'pax', 'Peaxi162Scf00038g02541' => 'pax', 'Peaxi162Scf00420g00432' => 'pax', 'Peaxi162Scf00442g00524' => 'pax', 'Peaxi162Scf00767g00214' => 'pax', 'PGR004G0011' => 'pgr', 'PGR031G1725' => 'pgr', 'PGR031G2546' => 'pgr', 'PGR142G3953' => 'pgr', 'PGSC0003DMG400000245' => 'stu', 'PGSC0003DMG400013337' => 'stu', 'PGSC0003DMG400020264' => 'stu', 'PGSC0003DMG400026726' => 'stu', 'PGSC0003DMG401009190' => 'stu', 'PGSC0003DMG401009663' => 'stu', 'PGSC0003DMG401023562' => 'stu', 'PGSC0003DMG402009190' => 'stu', 'PGSC0003DMG402009663' => 'stu', 'Phvul.005G184900' => 'pvu', 'Phvul.006G144300' => 'pvu', 'Phvul.008G150300' => 'pvu', 'Phvul.008G253800' => 'pvu', 'Phvul.008G254000' => 'pvu', 'Phvul.010G163500' => 'pvu', 'Potri.001G334800' => 'ptr', 'Potri.002G176200' => 'ptr', 'Potri.004G002000' => 'ptr', 'Potri.008G006000' => 'ptr', 'Potri.008G006100' => 'ptr', 'Potri.008G006200' => 'ptr', 'Potri.010G252000' => 'ptr', 'Potri.010G252100' => 'ptr', 'Potri.010G252400' => 'ptr', 'Potri.010G252500' => 'ptr', 'Potri.011G022600' => 'ptr', 'Pp3c12_5140' => 'ppa', 'Pp3c14_12430' => 'ppa', 'Pp3c4_15790' => 'ppa', 'Prupe.1G342000' => 'ppe', 'Prupe.2G194300' => 'ppe', 'Prupe.3G020700' => 'ppe', 'Prupe.3G020800' => 'ppe', 'Prupe.3G020900' => 'ppe', 'Prupe.3G302200' => 'ppe', 'Prupe.4G012800' => 'ppe', 'Psat1g177240' => 'psa', 'Psat3g176320' => 'psa', 'Psat7g260480' => 'psa', 'Psat7g260520' => 'psa', 'Psat7g264360' => 'psa', 'PSO063G1852' => 'pso', 'PSO063G3436' => 'pso', 'PSO170G1325' => 'pso', 'PSO210G1407' => 'pso', 'PSO782G1726' => 'pso', 'PSO832G3415' => 'pso', 'QL02p072630' => 'qlo', 'QL03p008421' => 'qlo', 'QL05p083921' => 'qlo', 'QL05p083935' => 'qlo', 'QL05p083948' => 'qlo', 'QL08p046460' => 'qlo', 'QL08p046495' => 'qlo', 'QL10p003440' => 'qlo', 'RcHm_v2.0_Chr1g0360741' => 'rch', 'RcHm_v2.0_Chr2g0149641' => 'rch', 'RcHm_v2.0_Chr2g0149651' => 'rch', 'RcHm_v2.0_Chr2g0149661' => 'rch', 'RcHm_v2.0_Chr2g0174691' => 'rch', 'RcHm_v2.0_Chr5g0001711' => 'rch', 'Rhsim01G0116500' => 'rsi', 'Rhsim01G0176900' => 'rsi', 'Rhsim02G0104300' => 'rsi', 'Rhsim08G0249600' => 'rsi', 'Rhsim12G0214700' => 'rsi', 'Rhsim13G0148300' => 'rsi', 'RhsimUnG0157500' => 'rsi', 'Sabra02G0137500' => 'sbr', 'Sabra04G0000900' => 'sbr', 'Sabra08G0003100' => 'sbr', 'Sabra08G0003200' => 'sbr', 'Sabra10G0196000' => 'sbr', 'Sabra10G0196100' => 'sbr', 'Sabra10G0196400' => 'sbr', 'Sabra10G0196500' => 'sbr', 'Sabra11G0013800' => 'sbr', 'Sabra16G0215900' => 'sbr', 'SalBow1G5227' => 'sbo', 'SalBow3G0689' => 'sbo', 'SalBow5G0257' => 'sbo', 'SalBow5G2530' => 'sbo', 'SalBow8G2823' => 'sbo', 'Sc12g0011130' => 'sci', 'Sc17g0007660' => 'sci', 'Sc18g0003800' => 'sci', 'Sc18g0003860' => 'sci', 'Sc26g0000430' => 'sci', 'Sed0005234' => 'sed', 'Sed0007241' => 'sed', 'Sed0009605' => 'sed', 'Sed0010529' => 'sed', 'Sed0010709' => 'sed', 'Sed0012524' => 'sed', 'Sed0019704' => 'sed', 'SEGI_05099' => 'sgi', 'SEGI_05361' => 'sgi', 'SEGI_06939' => 'sgi', 'SEGI_18660' => 'sgi', 'SEGI_31420' => 'sgi', 'SEGI_34116' => 'sgi', 'SEGI_34226' => 'sgi', 'SEGI_34461' => 'sgi', 'SEGI_34686' => 'sgi', 'SEGI_38721' => 'sgi', 'SGA_v2.0_scaffold122G33274' => 'sas', 'SGA_v2.0_scaffold122G33275' => 'sas', 'SGA_v2.0_scaffold231G43405' => 'sas', 'SGA_v2.0_scaffold365G50018' => 'sas', 'SGA_v2.0_scaffold41G15818' => 'sas', 'SGA_v2.0_scaffold4G01888' => 'sas', 'SGA_v2.0_scaffold65G22229' => 'sas', 'SGA_v2.0_scaffold71G23995' => 'sas', 'SGA_v2.0_scaffold71G23996' => 'sas', 'SGA_v2.0_scaffold7G03773' => 'sas', 'SHI31109' => 'shi', 'SHI31110' => 'shi', 'SMO117G0111' => 'smo', 'SMO271G0130' => 'smo', 'SMO356G0214' => 'smo', 'Solyc01g096300.4' => 'sly', 'Solyc02g093910.3' => 'sly', 'Solyc03g123910.3' => 'sly', 'Solyc03g123920.3' => 'sly', 'Solyc04g014680.4' => 'sly', 'Solyc11g012040.2' => 'sly', 'Solyc12g017450.2' => 'sly', 'Sopen01g040070' => 'spe', 'Sopen02g038560' => 'spe', 'Sopen03g041650' => 'spe', 'Sopen03g041660' => 'spe', 'Sopen04g006780' => 'spe', 'Sopen11g006830' => 'spe', 'Sopen12g008220' => 'spe', 'Sp1g15000' => 'spa', 'Sp1g38190' => 'spa', 'Sp2g16350' => 'spa', 'Sp3g19070' => 'spa', 'Sp5g33890' => 'spa', 'Sp6g04830' => 'spa', 'Sp7g20410' => 'spa', 'TAR374G0098' => 'tar', 'TAR383G0120' => 'tar', 'TAR622G1028' => 'tar', 'TAR626G0477' => 'tar', 'TAR626G1161' => 'tar', 'TAR627G0207' => 'tar', 'TAR629G1710' => 'tar', 'THA.LOC104798772' => 'tha', 'THA.LOC104805336' => 'tha', 'THA.LOC104808100' => 'tha', 'THA.LOC104812326' => 'tha', 'THA.LOC104812986' => 'tha', 'THA.LOC104813506' => 'tha', 'THA.LOC104813631' => 'tha', 'THA.LOC104825890' => 'tha', 'Thecc.01G336400' => 'tca', 'Thecc.04G029500' => 'tca', 'Thecc.06G059400' => 'tca', 'Thecc.06G059600' => 'tca', 'Thecc.06G059700' => 'tca', 'Thecc.06G231200' => 'tca', 'Thhalv10004265m.g' => 'esa', 'Thhalv10007531m.g' => 'esa', 'Thhalv10011521m.g' => 'esa', 'Thhalv10018485m.g' => 'esa', 'Thhalv10021206m.g' => 'esa', 'Thhalv10025202m.g' => 'esa', 'Thhalv10028632m.g' => 'esa', 'TPR.G1137' => 'tpr', 'TPR.G13062' => 'tpr', 'TPR.G3311' => 'tpr', 'TPR.G3352' => 'tpr', 'TPR.G38808' => 'tpr', 'TWI12G0078' => 'twi', 'TWI12G0700' => 'twi', 'TWI12G1302' => 'twi', 'TWI18G0500' => 'twi', 'TWI38G0601' => 'twi', 'TWI38G1260' => 'twi', 'TWI59G1139' => 'twi', 'TWI75G0606' => 'twi', 'TWI75G0969' => 'twi', 'TWI75G1251' => 'twi', 'TWI75G1504' => 'twi', 'unitig_0.g1915' => 'ugi', 'unitig_578.g16061' => 'ugi', 'unitig_578.g16062' => 'ugi', 'unitig_578.g16063' => 'ugi', 'unitig_62.g23362' => 'ugi', 'unitig_748.g7595' => 'ugi', 'unitig_748.g7924' => 'ugi', 'unitig_8.g4940' => 'ugi', 'unitig_8.g4941' => 'ugi', 'vmacro03654' => 'vma', 'vmacro12655' => 'vma', 'vmacro12656' => 'vma', 'vmacro14175' => 'vma', 'vmacro15784' => 'vma', 'vmacro17058' => 'vma', 'vmacro18748' => 'vma', 'vmacro18749' => 'vma', 'vmacro20811' => 'vma', 'vmacro23326' => 'vma', 'VMungo0331G0084' => 'vmu', 'VMungo0540G2456' => 'vmu', 'VMungo0647G2154' => 'vmu', 'VMungo0647G2539' => 'vmu', 'VMungo1383G1382' => 'vmu', 'Zm00001eb071500' => 'zma', 'Zm00001eb079150' => 'zma', 'Zm00001eb173320' => 'zma', 'Zm00001eb178120' => 'zma', 'Zm00001eb261590' => 'zma', 'Zm00001eb387450' => 'zma', 'Zm00001eb414260' => 'zma', 'Zm00001eb425280' => 'zma', 'Zm00001eb427660' => 'zma', 'Zm00001eb430480' => 'zma' ) $gf_id = 'HOM05D000772' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000772' ) $data_identifier = 'HOM05D000772' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 23, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 11, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 17, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430480' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1